论文标题
化学反应神经网络从数据中自主发现的反应途径
Autonomous Discovery of Unknown Reaction Pathways from Data by Chemical Reaction Neural Network
论文作者
论文摘要
化学反应发生在能量,环境,生物学和许多其他天然系统中,反应网络的推断对于了解和设计工程和生命科学中的化学过程至关重要。然而,由于缺乏对物种和反应的了解,揭示复杂系统和过程的反应途径仍然具有挑战性。在这里,我们提出了一种神经网络方法,该方法自主发现了时间分辨的物种浓度数据的反应途径。拟议的化学反应神经网络(CRNN)通过设计满足了基本物理法,包括大规模行动法和Arrhenius法律。因此,CRNN在物理上可以解释,因此可以解释反应途径,并且可以从神经网络的权重同时量化动力学参数。化学途径的推论是通过通过随机梯度下降训练CRNN的物种浓度数据来完成的。我们证明了该方法在阐明几种化学工程和生化系统的化学反应途径方面的成功实现和鲁棒性。 CRNN方法的自主推论排除了对候选网络提出的专家知识的需求,并解决了复杂系统中维度的诅咒。物理解释性还使CRNN不仅能够适合给定系统的数据,而且还可以开发有关可以推广到类似化学系统的未知途径的知识。
Chemical reactions occur in energy, environmental, biological, and many other natural systems, and the inference of the reaction networks is essential to understand and design the chemical processes in engineering and life sciences. Yet, revealing the reaction pathways for complex systems and processes is still challenging due to the lack of knowledge of the involved species and reactions. Here, we present a neural network approach that autonomously discovers reaction pathways from the time-resolved species concentration data. The proposed Chemical Reaction Neural Network (CRNN), by design, satisfies the fundamental physics laws, including the Law of Mass Action and the Arrhenius Law. Consequently, the CRNN is physically interpretable such that the reaction pathways can be interpreted, and the kinetic parameters can be quantified simultaneously from the weights of the neural network. The inference of the chemical pathways is accomplished by training the CRNN with species concentration data via stochastic gradient descent. We demonstrate the successful implementations and the robustness of the approach in elucidating the chemical reaction pathways of several chemical engineering and biochemical systems. The autonomous inference by the CRNN approach precludes the need for expert knowledge in proposing candidate networks and addresses the curse of dimensionality in complex systems. The physical interpretability also makes the CRNN capable of not only fitting the data for a given system but also developing knowledge of unknown pathways that could be generalized to similar chemical systems.