论文标题
使用深度学习,朝着视神经头的光学相干断层扫描图像的无标签3D分割
Towards Label-Free 3D Segmentation of Optical Coherence Tomography Images of the Optic Nerve Head Using Deep Learning
论文作者
论文摘要
自从引入光学相干断层扫描(OCT)以来,可以研究随着青光眼进展而发生的视神经头(ONH)组织的复杂的3D形态变化。尽管最近已经提出了几种深度学习(DL)技术来自动提取(分割)和对这些形态变化的量化,但设备特定的性质和准备手动分割(培训数据)的困难限制了其临床采用。随着一些新的制造商和下一代OCT设备进入市场,临床部署DL算法的复杂性仅在增加。为了解决这个问题,我们提出了一个基于DL的3D分割框架,该框架可以以无标签方式在OCT设备上轻松翻译(即无需为每个设备手动重新分段数据)。具体来说,我们开发了2组DL网络。第一个(称为增强器)能够增强3个OCT设备的OCT图像质量,并在这些设备上进行了统一的图像特征。第二次对6个重要的ONH组织层进行了3D分割。我们发现,增强器的使用对于我们的分割网络以实现设备独立性至关重要。换句话说,我们在其他两个具有高性能的设备中成功分割了3个设备中的任何一个设备中的3D分割网络(骰子系数> 0.92)。通过这种方法,我们可以自动从新的OCT设备进行分割图像,而无需从此类设备中进行手动分割数据。
Since the introduction of optical coherence tomography (OCT), it has been possible to study the complex 3D morphological changes of the optic nerve head (ONH) tissues that occur along with the progression of glaucoma. Although several deep learning (DL) techniques have been recently proposed for the automated extraction (segmentation) and quantification of these morphological changes, the device specific nature and the difficulty in preparing manual segmentations (training data) limit their clinical adoption. With several new manufacturers and next-generation OCT devices entering the market, the complexity in deploying DL algorithms clinically is only increasing. To address this, we propose a DL based 3D segmentation framework that is easily translatable across OCT devices in a label-free manner (i.e. without the need to manually re-segment data for each device). Specifically, we developed 2 sets of DL networks. The first (referred to as the enhancer) was able to enhance OCT image quality from 3 OCT devices, and harmonized image-characteristics across these devices. The second performed 3D segmentation of 6 important ONH tissue layers. We found that the use of the enhancer was critical for our segmentation network to achieve device independency. In other words, our 3D segmentation network trained on any of 3 devices successfully segmented ONH tissue layers from the other two devices with high performance (Dice coefficients > 0.92). With such an approach, we could automatically segment images from new OCT devices without ever needing manual segmentation data from such devices.