论文标题

使用专家协议作为黄金标准自动化图像中生物污染的评估

Automating the assessment of biofouling in images using expert agreement as a gold standard

论文作者

Bloomfield, Nathaniel J., Wei, Susan, Woodham, Bartholomew, Wilkinson, Peter, Robinson, Andrew

论文摘要

生物污染是生物体在浸入水中的表面上的积累。国际航运业尤其关注,因为它增加了燃料成本并通过为非土著海洋物种提供新地区建立的途径来提高燃料成本并带来生物安全风险。在司法管辖区加强生物污染风险管理法规的兴趣越来越大,但是进行水中检查并评估收集的数据以确定船体船体的生物污染状态是昂贵的。机器学习非常适合应对后一个挑战,在这里,我们应用深度学习以自动化来自水内检查的图像分类,以确定犯规的存在和严重性。我们合并了几个数据集,以获取从水内调查中收集的10,000张图像,这些图像由小组生物污染专家注释。我们比较了这些图像的120个样本子集的三位专家的注释,发现它们显示了89%的一致性(95%CI:87-92%)。随后由这些专家之一对整个数据集进行标记,与这组专家达到了相似的一致性,我们将其定义为最多的5%(p = 0.009-0.054)。使用这些专家标签,我们能够训练一个深度学习模型,该模型也与专家小组同意(P = 0.001-0.014),这表明,使用此方法,对图像中生物污染的自动分析是可行有效的。

Biofouling is the accumulation of organisms on surfaces immersed in water. It is of particular concern to the international shipping industry because it increases fuel costs and presents a biosecurity risk by providing a pathway for non-indigenous marine species to establish in new areas. There is growing interest within jurisdictions to strengthen biofouling risk-management regulations, but it is expensive to conduct in-water inspections and assess the collected data to determine the biofouling state of vessel hulls. Machine learning is well suited to tackle the latter challenge, and here we apply deep learning to automate the classification of images from in-water inspections to identify the presence and severity of fouling. We combined several datasets to obtain over 10,000 images collected from in-water surveys which were annotated by a group biofouling experts. We compared the annotations from three experts on a 120-sample subset of these images, and found that they showed 89% agreement (95% CI: 87-92%). Subsequent labelling of the whole dataset by one of these experts achieved similar levels of agreement with this group of experts, which we defined as performing at most 5% worse (p=0.009-0.054). Using these expert labels, we were able to train a deep learning model that also agreed similarly with the group of experts (p=0.001-0.014), demonstrating that automated analysis of biofouling in images is feasible and effective using this method.

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