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Nematic and columnar phases of lyotropic chromonic liquid crystals (LCLCs) have been long studied for their fundamental and applied prospects in material science and medical diagnostics. LCLC phases represent different self-assembled states of disc-shaped molecules, held together by noncovalent interactions that lead to highly sensitive concentration and temperature dependent properties. Yet, microscale insights into confined LCLCs, specifically in the context of confinement geometry and surface properties, are lacking. Here, we report the emergence of time dependent textures in static disodium chromoglycate (DSCG) solutions, confined in PDMS-based microfluidic devices. We use a combination of soft lithography, surface characterization and polarized optical imaging to generate and analyze the confinement-induced LCLC textures, and demonstrate that over time, herringbone and spherulite textures emerge due to spontaneous nematic (N) to columnar M-phase transition, propagating from the LCLC-PDMS interface into the LCLC bulk. By varying the confinement geometry, anchoring conditions and the initial DSCG concentration, we can systematically tune the temporal dynamics of the N to M-phase transition and textural behaviour of the confined LCLC. Since static molecular states register the initial conditions for LC flows, the time dependent boundary and bulk conditions reported here suggest that the local surface-mediated dynamics could be central in understanding LCLC flows, and in turn, the associated transport properties of this versatile material.