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This paper presents an eXplainable Fault Detection and Diagnosis System (XFDDS) for incipient faults in PV panels. The XFDDS is a hybrid approach that combines the model-based and data-driven framework. Model-based FDD for PV panels lacks high fidelity models at low irradiance conditions for detecting incipient faults. To overcome this, a novel irradiance based three diode model (IB3DM) is proposed. It is a nine parameter model that provides higher accuracy even at low irradiance conditions, an important aspect for detecting incipient faults from noise. To exploit PV data, extreme gradient boosting (XGBoost) is used due to its ability to detecting incipient faults. Lack of explainability, feature variability for sample instances, and false alarms are challenges with data-driven FDD methods. These shortcomings are overcome by hybridization of XGBoost and IB3DM, and using eXplainable Artificial Intelligence (XAI) techniques. To combine the XGBoost and IB3DM, a fault-signature metric is proposed that helps reducing false alarms and also trigger an explanation on detecting incipient faults. To provide explainability, an eXplainable Artificial Intelligence (XAI) application is developed. It uses the local interpretable model-agnostic explanations (LIME) framework and provides explanations on classifier outputs for data instances. These explanations help field engineers/technicians for performing troubleshooting and maintenance operations. The proposed XFDDS is illustrated using experiments on different PV technologies and our results demonstrate the perceived benefits.