论文标题

胸部CT中交互式COVID-19病变分割的3D注释软件的开发和评估

Development and evaluation of a 3D annotation software for interactive COVID-19 lesion segmentation in chest CT

论文作者

Bendazzoli, Simone, Brusini, Irene, Astaraki, Mehdi, Persson, Mats, Yu, Jimmy, Connolly, Bryan, Nyrén, Sven, Strand, Fredrik, Smedby, Örjan, Wang, Chunliang

论文摘要

从胸部CT扫描中分割COVID-19,对于更好地诊断疾病并研究其程度非常重要。但是,鉴于病变的形状,大小和位置的较大变化,手动细分可能非常耗时和主观。另一方面,我们仍然缺少大型手动分割数据集,这些数据集可用于训练基于机器学习的模型以进行全自动分割。在这项工作中,我们为COVID-19病变细分提出了一种新的交互式和用户友好的工具,该工具通过手动校正步骤交替使用自动步骤(基于级别集体细分和统计形状建模)来起作用。目前的软件由两个不同的专业组进行了测试:一组三个放射科医生和具有工程背景的三个用户之一。两组都获得了有希望的分割结果,这在组内和组内都达成了令人满意的一致性。此外,与完全手动分割相比,我们的交互式工具被证明可显着加快病变分割过程。最后,我们研究了观察者间的变异性,以及它如何受到几个主观因素的强烈影响,表明了AI研究人员和临床医生意识到病变细分结果的不确定性的重要性。

Segmentation of COVID-19 lesions from chest CT scans is of great importance for better diagnosing the disease and investigating its extent. However, manual segmentation can be very time consuming and subjective, given the lesions' large variation in shape, size and position. On the other hand, we still lack large manually segmented datasets that could be used for training machine learning-based models for fully automatic segmentation. In this work, we propose a new interactive and user-friendly tool for COVID-19 lesion segmentation, which works by alternating automatic steps (based on level-set segmentation and statistical shape modeling) with manual correction steps. The present software was tested by two different expertise groups: one group of three radiologists and one of three users with an engineering background. Promising segmentation results were obtained by both groups, which achieved satisfactory agreement both between- and within-group. Moreover, our interactive tool was shown to significantly speed up the lesion segmentation process, when compared to fully manual segmentation. Finally, we investigated inter-observer variability and how it is strongly influenced by several subjective factors, showing the importance for AI researchers and clinical doctors to be aware of the uncertainty in lesion segmentation results.

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