论文标题

部分可观测时空混沌系统的无模型预测

Virtual Histological Staining of Label-Free Total Absorption Photoacoustic Remote Sensing (TA-PARS)

论文作者

Boktor, Marian, Ecclestone, Benjamin, Pekar, Vlad, Dinakaran, Deepak, Mackey, John R., Fieguth, Paul, Reza, Parsin Haji

论文摘要

组织病理学可视化是现代医学和生物学研究的支柱。手术肿瘤学仅依赖于术后组织学来确定明确的手术成功和指导辅助治疗。当前的组织学工作流程基于对组织化学染色组织的明亮场微观评估,并具有一些主要局限性。例如,用于布莱德评估的染色标本需要冗长的样本处理,延迟干预措施几天甚至几周。因此,需要改善组织病理学方法的迫切需要。在本文中,我们提出了一种基于深度学习的方法,用于无染色组织的全部吸收光声遥感(TA-PARS)图像的虚拟无标记的组织化学染色。 TA-PARS提供了一系列直接测量的无标记对比度,例如散射和总吸收(辐射和非辐射性),非常适合开发H&E色颜色,而无需推断任意的组织结构。我们使用PIX2PIX生成对抗网络(GAN)来开发类似于无标签TA-PARS图像的H&E染色的可视化。首先用TA-Pars对人皮肤组织的薄切片进行化学染色,然后用H&E化学染色,从而在虚拟和化学染色之间产生一对一的比较。一对一匹配的实际上和化学染色的图像表现出很高的一致性,可验证TA-Pars图像的数字化着色与金标准H&E。四位皮肤病学家审查了TA-Pars图像,他们确认它们具有诊断质量,并且分辨率,对比度和颜色允许的解释允许,就像它们是H&E一样。提出的方法为开发TA-PARS无幻灯片组织学铺平了道路,该组织有望大大减少从样品切除到组织学成像的时间。

Histopathological visualizations are a pillar of modern medicine and biological research. Surgical oncology relies exclusively on post-operative histology to determine definitive surgical success and guide adjuvant treatments. The current histology workflow is based on bright-field microscopic assessment of histochemical stained tissues and has some major limitations. For example, the preparation of stained specimens for brightfield assessment requires lengthy sample processing, delaying interventions for days or even weeks. Hence, there is a pressing need for improved histopathology methods. In this paper, we present a deep-learning-based approach for virtual label-free histochemical staining of total-absorption photoacoustic remote sensing (TA-PARS) images of unstained tissue. TA-PARS provides an array of directly measured label-free contrasts such as scattering and total absorption (radiative and non-radiative), ideal for developing H&E colorizations without the need to infer arbitrary tissue structures. We use a Pix2Pix generative adversarial network (GAN) to develop visualizations analogous to H&E staining from label-free TA-PARS images. Thin sections of human skin tissue were first virtually stained with the TA-PARS, then were chemically stained with H&E producing a one-to-one comparison between the virtual and chemical staining. The one-to-one matched virtually- and chemically- stained images exhibit high concordance validating the digital colorization of the TA-PARS images against the gold standard H&E. TA-PARS images were reviewed by four dermatologic pathologists who confirmed they are of diagnostic quality, and that resolution, contrast, and color permitted interpretation as if they were H&E. The presented approach paves the way for the development of TA-PARS slide-free histology, which promises to dramatically reduce the time from specimen resection to histological imaging.

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