论文标题

条形码区分了神经元tauopathy的形态

Barcodes distinguish morphology of neuronal tauopathy

论文作者

Beers, David, Goniotaki, Despoina, Hanger, Diane P., Goriely, Alain, Harrington, Heather A.

论文摘要

众所周知,神经元的几何形状对于它们的功能很重要。因此,神经元通常通过其形态进行分类。最近的两种方法,即持续的同源性和拓扑形态描述符,将形态学描述符分配给具有给定功能的神经元,例如欧几里得与神经元根的距离。这些条形码可以转换为称为持久图像的矩阵,然后可以将其平均在各组中平均。我们表明,当定义函数是词根的路径长度时,拓扑形态的描述符和持续的同源性都是等效的。我们进一步表明,路径长度过程产生的持久性图像提供了可解释的神经元形态的摘要。我们引入{拓扑形态函数},这是一种类似于Sholl功能的功能,可以从相关的拓扑形态描述符中恢复。为了证明这种拓扑方法,我们将健康皮质和海马小鼠神经元与受到进行性陶氏病影响的人进行比较。我们发现健康神经元的形态和症状症患者的形态存在显着差异。我们使用持久图像得出的结论是,患病组倾向于具有较短分支的神经元,而远离躯体的分支更少。

The geometry of neurons is known to be important for their functions. Hence, neurons are often classified by their morphology. Two recent methods, persistent homology and the topological morphology descriptor, assign a morphology descriptor called a barcode to a neuron equipped with a given function, such as the Euclidean distance from the root of the neuron. These barcodes can be converted into matrices called persistence images, which can then be averaged across groups. We show that when the defining function is the path length from the root, both the topological morphology descriptor and persistent homology are equivalent. We further show that persistence images arising from the path length procedure provide an interpretable summary of neuronal morphology. We introduce {topological morphology functions}, a class of functions similar to Sholl functions, that can be recovered from the associated topological morphology descriptor. To demonstrate this topological approach, we compare healthy cortical and hippocampal mouse neurons to those affected by progressive tauopathy. We find a significant difference in the morphology of healthy neurons and those with a tauopathy at a postsymptomatic age. We use persistence images to conclude that the diseased group tends to have neurons with shorter branches as well as fewer branches far from the soma.

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