论文标题
分类学和进化预测图像中使用深度学习
Taxonomy and evolution predicting using deep learning in images
论文作者
论文摘要
分子和形态特征是生物分类学的重要部分,是矛盾的,但需要整合。如今,有机体的形象识别和生物信息学正在出现和热门问题,但它们之间存在差距。在这项工作中,由遗传信息介导的多分支识别框架桥接了这个障碍,该障碍建立了宏观形态学和蘑菇的微分子信息之间的联系。提出了新型的多角度结构来融合来自三个分支模型的特征图像,从而显着提高了识别的准确性约10%,高达90%以上。此外,通过使用遗传距离嵌入作为预测图像距离和物种识别的表示空间,将遗传信息实现到蘑菇图像识别任务中。还首次讨论了传统分类任务的语义过度拟合和细粒图像识别的粒度。使用零拍的学习任务在细粒的场景中研究了该模型的普遍性,这可以预测看不见的样本的分类和进化信息。我们提出了第一种将图像映射到DNA的方法,即使用编码器映射图像来遗传距离,然后通过预先训练的解码器解码DNA,其中37种DNA预测的总检验准确性为87.45%。这项研究通过系统地研究蘑菇图像识别问题,弥合宏观生物学信息和微观分子信息之间的差距,从而创建一个新颖的识别框架,这将在未来为智能生物识别技术提供新的参考。
Molecular and morphological characters, as important parts of biological taxonomy, are contradictory but need to be integrated. Organism's image recognition and bioinformatics are emerging and hot problems nowadays but with a gap between them. In this work, a multi-branching recognition framework mediated by genetic information bridges this barrier, which establishes the link between macro-morphology and micro-molecular information of mushrooms. The novel multi-perspective structure is proposed to fuse the feature images from three branching models, which significantly improves the accuracy of recognition by about 10% and up to more than 90%. Further, genetic information is implemented to the mushroom image recognition task by using genetic distance embeddings as the representation space for predicting image distance and species identification. Semantic overfitting of traditional classification tasks and the granularity of fine-grained image recognition are also discussed in depth for the first time. The generalizability of the model was investigated in fine-grained scenarios using zero-shot learning tasks, which could predict the taxonomic and evolutionary information of unseen samples. We presented the first method to map images to DNA, namely used an encoder mapping image to genetic distances, and then decoded DNA through a pre-trained decoder, where the total test accuracy on 37 species for DNA prediction is 87.45%. This study creates a novel recognition framework by systematically studying the mushroom image recognition problem, bridging the gap between macroscopic biological information and microscopic molecular information, which will provide a new reference for intelligent biometrics in the future.