论文标题

建立基因疾病关联的关系提取基线:一项可重复性研究

Building a Relation Extraction Baseline for Gene-Disease Associations: A Reproducibility Study

论文作者

Menotti, Laura

论文摘要

可重复性是科学研究的重要任务。对于研究人员来说,将新开发的系统与最先进的系统进行比较,以评估他们是否取得突破至关重要。但是,以前的工作可能无法立即重现,例如由于缺乏源代码。在这项工作中,我们重现了Dexter,这是一种从生物医学摘要中自动提取基因疾病关联(GDA)的系统。目的是为未来的关系提取(RE)提供基准,使研究人员能够测试和比较其结果。

Reproducibility is an important task in scientific research. It is crucial for researchers to compare newly developed systems with the state-of-the-art to assess whether they made a breakthrough. However previous works may not be immediately reproducible, for example due to the lack of source code. In this work we reproduce DEXTER, a system to automatically extract Gene-Disease Associations (GDAs) from biomedical abstracts. The goal is to provide a benchmark for future works regarding Relation Extraction (RE), enabling researchers to test and compare their results.

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