论文标题

从卫星中发现病毒:对西尼罗河病毒通过图神经网络进行建模

Spotting Virus from Satellites: Modeling the Circulation of West Nile Virus Through Graph Neural Networks

论文作者

Bonicelli, Lorenzo, Porrello, Angelo, Vincenzi, Stefano, Ippoliti, Carla, Iapaolo, Federica, Conte, Annamaria, Calderara, Simone

论文摘要

西尼罗河病毒(WNV)的发生代表了最常见的蚊子传播病毒感染之一。它的循环通常与适合载体增殖和病毒复制的气候和环境条件有关。最重要的是,已经开发了几种统计模型来塑造和预测WNV循环:特别是,最近的地球观察数据(EO)数据的大量可用性,再加上人工智能领域的持续进步,提供了宝贵的机会。 在本文中,我们试图通过用卫星图像为深度神经网络(DNN)来预测WNV循环,这些图像已被广泛证明可以具有环境和气候特征。值得注意的是,尽管以前的方法可以独立地分析每个地理位置,但我们提出了一种空间感知方法,该方法也考虑了近距离位点的特征。具体而言,我们建立在图形神经网络(GNN)的基础上,以从相邻位置进行汇总特征,并进一步扩展这些模块以考虑多个关系,例如两个地点之间的温度和土壤水分差异以及地理距离。此外,我们将与时间相关的信息直接注入模型中,以考虑病毒传播的季节性。 我们设计了一个实验环境,将卫星图像(来自Landsat和Sentinel任务)与意大利WNV循环的地面真相观察结合在一起。我们表明,与适当的预训练阶段配对时,我们提出的多种差异图表网络(MAGAT)始终导致更高的性能。最后,我们在消融研究中评估了MAGAT每个组成部分的重要性。

The occurrence of West Nile Virus (WNV) represents one of the most common mosquito-borne zoonosis viral infections. Its circulation is usually associated with climatic and environmental conditions suitable for vector proliferation and virus replication. On top of that, several statistical models have been developed to shape and forecast WNV circulation: in particular, the recent massive availability of Earth Observation (EO) data, coupled with the continuous advances in the field of Artificial Intelligence, offer valuable opportunities. In this paper, we seek to predict WNV circulation by feeding Deep Neural Networks (DNNs) with satellite images, which have been extensively shown to hold environmental and climatic features. Notably, while previous approaches analyze each geographical site independently, we propose a spatial-aware approach that considers also the characteristics of close sites. Specifically, we build upon Graph Neural Networks (GNN) to aggregate features from neighbouring places, and further extend these modules to consider multiple relations, such as the difference in temperature and soil moisture between two sites, as well as the geographical distance. Moreover, we inject time-related information directly into the model to take into account the seasonality of virus spread. We design an experimental setting that combines satellite images - from Landsat and Sentinel missions - with ground truth observations of WNV circulation in Italy. We show that our proposed Multi-Adjacency Graph Attention Network (MAGAT) consistently leads to higher performance when paired with an appropriate pre-training stage. Finally, we assess the importance of each component of MAGAT in our ablation studies.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源