论文标题

通过单蛋白对膜曲率感测的物理极限

Physical limits to membrane curvature sensing by a single protein

论文作者

Badvaram, Indrajit, Camley, Brian A.

论文摘要

膜曲率传感对于多种生物过程至关重要。最近的实验表明,即使SEPTIN的数量级比珠子小,单个纳米尺寸的Septin蛋白可以区分一个微米和三个微米直径的膜涂层玻璃珠。这种传感能力尤其令人惊讶,因为曲率感应蛋白必须处理膜的持续热波动,从而导致珠子的曲率与局部膜曲率在蛋白质上瞬间感测。使用波动膜的连续模型,我们研究了通过测量局部膜曲率或以双层脂质密度作为代理的局部膜曲率或使用双层脂质密度来感知微小尺度曲率的蛋白质是可行的。为此,我们开发算法以模拟脂质密度和膜形状波动。我们在蛋白质大小,膜厚度,膜弯曲模量,膜覆盖强度和珠子大小方面得出了蛋白质的感测功效。为了解释实验蛋白珠的关联速率,我们开发了两个类别的预测模型:i)对于最大程度地与首选曲率关联的蛋白质,ii)对于高于阈值曲率的缔合速率增强的蛋白质。我们发现,实验观察到的感应功效接近施加在SEPTIN大小的蛋白上的理论感应极限,并且蛋白质感知的膜曲率波动的差异确定了缔合速率如何急剧取决于珠子的曲率。

Membrane curvature sensing is essential for a diverse range of biological processes. Recent experiments have revealed that a single nanometer-sized septin protein can distinguish between membrane-coated glass beads of one micron and three micron diameters, even though the septin is orders of magnitude smaller than the beads. This sensing ability is especially surprising since curvature-sensing proteins must deal with persistent thermal fluctuations of the membrane, leading to discrepancies between the bead's curvature and the local membrane curvature sensed instantaneously by a protein. Using continuum models of fluctuating membranes, we investigate whether it is feasible for a protein acting as a perfect observer of the membrane to sense micron-scale curvature either by measuring local membrane curvature or by using bilayer lipid densities as a proxy. To do this, we develop algorithms to simulate lipid density and membrane shape fluctuations. We derive physical limits to the sensing efficacy of a protein in terms of protein size, membrane thickness, membrane bending modulus, membrane-substrate adhesion strength, and bead size. To explain the experimental protein-bead association rates, we develop two classes of predictive models: i) for proteins that maximally associate to a preferred curvature, and ii) for proteins with enhanced association rates above a threshold curvature. We find that the experimentally observed sensing efficacy is close to the theoretical sensing limits imposed on a septin-sized protein, and that the variance in membrane curvature fluctuations sensed by a protein determines how sharply the association rate depends on the curvature of the bead.

扫码加入交流群

加入微信交流群

微信交流群二维码

扫码加入学术交流群,获取更多资源