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Strengthening the synergy between simulations and observations is essential to test galaxy formation and evolution theories. To achieve this goal, in the first paper of this series, we presented a method to generate mock SDSS-IV/MaNGA integral-field spectroscopic galaxy observations from cosmological simulations. In this second paper, we build the iMaNGA catalogue consisting of $\sim$1,000 unique galaxies from the TNG50 cosmological simulations, selected to mimic the SDSS-IV/MaNGA-Primary sample selection. Here we present and discuss the iMaNGA sample and its comparison to the MaNGA Primary catalogue. The iMaNGA sample well recovers the MaNGA-Primary sample in terms of stellar mass vs angular size relation and spatial resolution. The Sérsic index vs angular size relation, instead, is not reproduced well by the simulations, mostly because of a paucity of high-mass elliptical galaxies in TNG50. We also investigate our ability to recover the galaxy kinematics and stellar population properties with full-spectral fitting. We demonstrate that 'intrinsic' and `recovered' stellar kinematics, stellar ages and metallicities are consistent, with residuals compatible with zero within 1$-σ$. Also`intrinsic' and `recovered' star formation histories display a great resemblance. We conclude that our mock generation and spectral fitting processes do not distort the `intrinsic' galaxy properties. Therefore, in the third paper of this series, we can meaningfully test the cosmological simulations, comparing the stellar population properties and kinematics of the iMaNGA mock galaxies and the MaNGA observational results.