论文标题

在美国的COVID-19预测中杠杆监控:一项深度学习研究

Leveraging Wastewater Monitoring for COVID-19 Forecasting in the US: a Deep Learning study

论文作者

Fazli, Mehrdad, Shakeri, Heman

论文摘要

2019年底,Covid-19的爆发是一场健康危机的开始,该危机震惊了世界,并在随后的几年中夺走了数百万的生命。许多政府和卫生官员未能阻止其社区中感染的迅速流传。长期的孵化期和大量无症状病例使Covid-19特别难以捉摸。但是,除了确认的每日病例,住院和死亡等常规指标外,除了常规指标外,废水监测很快成为有前途的数据源。尽管对废水病毒负荷数据的有效性达成共识,但缺乏方法学方法来利用病毒载量来改善COVID-19的预测。本文建议使用深度学习自动发现每日确认的病例和病毒负载数据之间的关系。我们训练了一个深度的时间卷积网络(DEEPTCN)和一个时间融合变压器(TFT)模型,以构建全球预测模型。我们补充了每天确认的病毒载荷和其他社会经济因素作为模型的协变量。我们的结果表明,TFT的表现优于DEEPTCN,并且学会了病毒载荷和日常病例之间的更好关联。我们证明,为模型配备病毒载荷可以显着提高其预测性能。此外,病毒载荷被证明是仅次于遏制和健康指数的第二大预测输入。我们的结果揭示了训练位置不足的深度学习模型的可行性,以捕获废水病毒载荷数据时感染扩散的动力学。

The outburst of COVID-19 in late 2019 was the start of a health crisis that shook the world and took millions of lives in the ensuing years. Many governments and health officials failed to arrest the rapid circulation of infection in their communities. The long incubation period and the large proportion of asymptomatic cases made COVID-19 particularly elusive to track. However, wastewater monitoring soon became a promising data source in addition to conventional indicators such as confirmed daily cases, hospitalizations, and deaths. Despite the consensus on the effectiveness of wastewater viral load data, there is a lack of methodological approaches that leverage viral load to improve COVID-19 forecasting. This paper proposes using deep learning to automatically discover the relationship between daily confirmed cases and viral load data. We trained one Deep Temporal Convolutional Networks (DeepTCN) and one Temporal Fusion Transformer (TFT) model to build a global forecasting model. We supplement the daily confirmed cases with viral loads and other socio-economic factors as covariates to the models. Our results suggest that TFT outperforms DeepTCN and learns a better association between viral load and daily cases. We demonstrated that equipping the models with the viral load improves their forecasting performance significantly. Moreover, viral load is shown to be the second most predictive input, following the containment and health index. Our results reveal the feasibility of training a location-agnostic deep-learning model to capture the dynamics of infection diffusion when wastewater viral load data is provided.

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